Frederik Schulz

Assemble genomes and metagenomes while producing quality control artifacts.

Create production-ready Plotly Dash dashboards with consistent theming and clear layouts.

Automate web interactions with the agent-browser CLI for tasks like scraping and UI testing.

Search bioRxiv preprints using the official API for recent biology research.

Expert computational biologist for omics workflows including QC, assembly, and phylogenomics.

Create marimo notebooks using Python with a simple and structured format.

Create polished, publication-quality visualizations using matplotlib and seaborn.

Conduct a comprehensive multi-agent review of scientific manuscripts with specialized reviewers and editor oversight.

CodexLoop is a plan-driven orchestration agent for executing and tracking implementation tasks.

Search the PMC Open Access literature using structured JSON queries with polars-dovmed.

Create interactive components for Marimo notebooks using anywidget.

Assess the impact of academic papers and journals using citation counts and impact factors.

Search arXiv preprints and generate Markdown summaries from arXiv IDs.

Build marker gene alignments and phylogenetic trees efficiently.

Critically evaluate AI scientist outputs in biology and related fields.

Access genomics metadata and download genome files from JGI Lakehouse.

Streamline the drafting and revision of scientific manuscripts with a structured multi-agent workflow.

Ingest, QC, and map reads with reproducible outputs for raw read processing.

Design and scaffold bioinformatics pipelines using Prefect+Dask or Nextflow for efficient execution.

Call genes and annotate features for prokaryotes, viruses, and eukaryotes.

Expert scientific writer and editor for high-quality manuscripts and peer reviews.

Initialize a bioinformatics project scaffold with reproducible environments and data cataloging.

Generate reproducible Methods documentation from workflow run artifacts for bioinformatics.

Quickly fetch the latest API and SDK documentation using the chub CLI.

Easily add 'Open in molab' badges linking to marimo notebooks in markdown or HTML.

Create and refactor reproducible analysis notebooks using Marimo or Jupyter.

Convert Jupyter notebooks (.ipynb) into marimo notebooks (.py) efficiently.

Run a Codex-native planning and implementation loop with progress tracking and failure memory.

Perform metagenomic binning, refinement, and quality control with completeness and contamination checks.

Query the Crossref REST API for DOI validation and citation metadata management.

A collection of agents and skills for bioinformatics and data visualization.

Perform functional annotation and taxonomy inference from sequence homology.

Cluster proteins into orthogroups and derive pangenome matrices efficiently.

Structured review framework for evaluating AI/ML and bioscience proposals.

Predict protein structures and annotate them based on structural data.

Evaluate scientific rigor and evidence quality for claims and studies.

Expert data visualization specialist for creating publication-quality figures and dashboards.

Expert agent for literature discovery, citation metadata, and evidence-based search triage.

Aggregate results, train ML models, and produce validated reports.

Automatically implement research papers in a marimo notebook without user input.

Track and reconcile taxonomy updates from multiple authoritative sources with versioned provenance.

Detect, classify, and perform quality control on viral contigs efficiently.